If you’ve been on the hunt for a treat that feels indulgent yet leaves you feeling great about what you’re eating, this Healthy Pumpkin Chocolate Chip Cookies Recipe is exactly what you need. These cookies are perfectly soft and packed with warm spices, natural sweetness from maple syrup, and the comforting depth of pumpkin puree. Each bite offers a delightful balance of wholesome ingredients and chocolatey goodness that’s ideal for cozy afternoons or sharing with friends and family. Plus, they’re surprisingly easy to whip up, making them a go-to recipe when you crave something homemade but nourishing.

Ingredients You’ll Need
Gathering the right ingredients for these cookies is both straightforward and rewarding. Each item plays a crucial role in shaping the flavor, texture, and wholesome vibe of this recipe, while keeping everything naturally delicious and satisfying.
- 1 cup canned pumpkin puree: Provides moisture, a subtle sweetness, and that rich autumnal flavor everyone loves.
- 1/2 cup coconut oil, melted: Adds healthy fats and a tender crumb while keeping the cookies moist.
- 1/2 cup maple syrup: A natural sweetener that deepens the taste with its caramel notes.
- 1 large egg: Helps bind everything together and contributes to structure.
- 1 teaspoon vanilla extract: Enhances all the flavors with its warm, sweet aroma.
- 1 1/2 cups whole wheat flour: Brings a hearty, nutty base that’s packed with fiber.
- 1 teaspoon baking soda: Helps the cookies rise slightly and keeps them soft.
- 1 teaspoon ground cinnamon: Offers that classic pumpkin-spice kick.
- 1/2 teaspoon ground nutmeg: Adds depth with its warm, nutty tones.
- 1/2 teaspoon ground ginger: Gives a subtle zing that lifts the spices beautifully.
- 1/2 teaspoon salt: Balances sweetness and intensifies the flavors.
- 1 cup dark chocolate chips: Melts into little pockets of rich, bittersweet satisfaction in every bite.
How to Make Healthy Pumpkin Chocolate Chip Cookies Recipe
Step 1: Preheat Your Oven and Prepare the Baking Sheet
Start by setting your oven to 350°F (175°C). Lining a baking sheet with parchment paper or a silicone baking mat ensures your cookies won’t stick and makes cleanup effortless. This simple step sets you up perfectly for baking success.
Step 2: Combine Wet Ingredients
In a large mixing bowl, whisk together the pumpkin puree, melted coconut oil, maple syrup, egg, and vanilla extract until smooth and fully blended. This mixture forms the moist, flavorful base of your cookies, packing them with natural sweetness and silkiness.
Step 3: Mix Dry Ingredients Separately
In another bowl, whisk together the whole wheat flour, baking soda, cinnamon, nutmeg, ginger, and salt. This blend of spices and leavening agents creates a warm, aromatic backbone that defines the character of your cookie.
Step 4: Bring Wet and Dry Ingredients Together
Gradually add the dry ingredients to the wet mixture, stirring gently until just combined. Avoid overmixing here to keep the cookies tender. Then, fold in the dark chocolate chips to spread that blissful chocolate throughout every bite.
Step 5: Form and Bake the Cookies
Drop spoonfuls of dough onto your prepared baking sheet, spacing them about 2 inches apart to allow spreading. Bake for 10-12 minutes until the edges turn lightly golden and the centers look set but still soft. The aroma filling your kitchen at this point will have you eagerly waiting.
Step 6: Cool Before Enjoying
Once baked, let the cookies cool on the pan for a few minutes. Then transfer them to a wire rack to cool completely. This resting time helps them firm up just enough while preserving a chewy, moist texture that’s utterly addictive.
How to Serve Healthy Pumpkin Chocolate Chip Cookies Recipe

Garnishes
Although these cookies are delightful on their own, sprinkling a tiny bit of flaky sea salt on top just after baking can really amplify the chocolate and spice flavors. For a festive touch, a light dusting of cinnamon sugar or a drizzle of melted dark chocolate adds a lovely, elegant flair.
Side Dishes
Pair your pumpkin chocolate chip cookies with a warm cup of spiced chai tea or a creamy latte to complement the spices and chocolate. For a wholesome breakfast twist, serve alongside a bowl of Greek yogurt topped with fresh fruit and a drizzle of honey.
Creative Ways to Present
For gatherings, arrange these cookies on a rustic wooden platter with mini pumpkins and autumn leaves for a cozy theme. You can also sandwich the cookies with a smear of cream cheese frosting or nut butter to elevate the experience and impress guests with minimal effort.
Make Ahead and Storage
Storing Leftovers
These cookies stay soft and flavorful when stored in an airtight container at room temperature for up to 4 days. Keeping them sealed prevents drying out and makes it easy to grab a quick sweet treat anytime.
Freezing
If you want to make a batch ahead, these cookies freeze beautifully. Place them in a single layer on a baking sheet to freeze initially, then transfer to a freezer-safe bag or container. They’ll keep fresh for up to 3 months, giving you a ready dessert whenever the craving hits.
Reheating
Simply warm the cookies in a microwave for 10-15 seconds or in a low oven for a few minutes to revive that just-baked softness and melty chocolate charm. It’s like having fresh cookies all over again without the wait.
FAQs
Can I use fresh pumpkin instead of canned for this Healthy Pumpkin Chocolate Chip Cookies Recipe?
Yes, you can use fresh pumpkin, but be sure to cook and puree it first to get the right consistency and moisture level. Canned pumpkin puree offers convenience and consistency, but fresh pumpkin works perfectly if prepared correctly.
Are these cookies gluten-free?
This particular recipe uses whole wheat flour, so it’s not gluten-free. However, swapping in a gluten-free flour blend with similar properties should work, but results may vary slightly in texture.
Can I substitute the coconut oil with another fat?
Absolutely! Melted butter or a neutral oil like vegetable or avocado oil can be used instead, though coconut oil adds a subtle hint of flavor and helps keep the cookies tender.
How do I make these cookies vegan?
To make this recipe vegan, replace the egg with a flax or chia egg (1 tablespoon ground flaxseed or chia seeds mixed with 3 tablespoons water) and ensure your chocolate chips are dairy-free.
Can I reduce the sugar even more in this Healthy Pumpkin Chocolate Chip Cookies Recipe?
Since maple syrup is the main sweetener, you can reduce it slightly, but keep in mind that it affects both sweetness and moisture. Adjust carefully and remember the chocolate chips also add sweetness.
Final Thoughts
There is something truly special about these Healthy Pumpkin Chocolate Chip Cookies Recipe—they combine comfort and nutrition with each chewy, chocolate-studded bite. Whether you’re baking for a cozy night in or a festive gathering, I encourage you to give this recipe a try. Your taste buds (and your friends!) will thank you for bringing a little wholesome happiness into your cookie jar.
Print
Healthy Pumpkin Chocolate Chip Cookies Recipe
- Prep Time: 10 minutes
- Cook Time: 12 minutes
- Total Time: 22 minutes
- Yield: 24 cookies
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
These Healthy Pumpkin Chocolate Chip Cookies are a delicious twist on traditional cookies, featuring wholesome whole wheat flour, nutrient-rich pumpkin puree, and naturally sweetened with maple syrup. Perfectly spiced with cinnamon, nutmeg, and ginger, these cookies are soft, moist, and packed with dark chocolate chips for an indulgent yet healthy treat.
Ingredients
Wet Ingredients
- 1 cup canned pumpkin puree
- 1/2 cup coconut oil, melted
- 1/2 cup maple syrup
- 1 large egg
- 1 teaspoon vanilla extract
Dry Ingredients
- 1 1/2 cups whole wheat flour
- 1 teaspoon baking soda
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon ground ginger
- 1/2 teaspoon salt
Additional
- 1 cup dark chocolate chips
Instructions
- Preheat Oven: Preheat your oven to 350°F (175°C). Line a baking sheet with parchment paper or a silicone baking mat to prevent sticking and ensure even baking.
- Combine Wet Ingredients: In a large mixing bowl, whisk together the pumpkin puree, melted coconut oil, maple syrup, egg, and vanilla extract until the mixture is smooth and well combined, creating a uniform wet base for your cookie dough.
- Combine Dry Ingredients: In a separate bowl, whisk the whole wheat flour, baking soda, ground cinnamon, ground nutmeg, ground ginger, and salt together to evenly distribute the spices and leavening agent.
- Mix Ingredients: Gradually add the dry ingredient mixture to the wet ingredients. Stir gently until just combined, being careful not to overmix to maintain a tender cookie texture. Fold in the dark chocolate chips evenly throughout the dough.
- Form Cookies: Using a spoon, drop spoonfuls of the cookie dough onto the prepared baking sheet, spacing each about 2 inches apart to allow spreading during baking.
- Bake: Place the baking sheet in the preheated oven and bake for 10-12 minutes, or until the cookies appear set with lightly browned edges, signaling they are cooked through but still soft inside.
- Cool: Let the cookies cool on the baking sheet for a few minutes to firm up before transferring them to a wire rack to cool completely. This prevents them from breaking and crisps the edges slightly.
Notes
- Make sure to use canned pumpkin puree, not pumpkin pie filling, for best results.
- Whole wheat flour adds fiber and nutrients but can make cookies denser; do not overmix to keep them tender.
- The coconut oil can be substituted with melted butter if desired.
- If you prefer a sweeter cookie, increase maple syrup to 2/3 cup.
- Store cookies in an airtight container at room temperature for up to 5 days or freeze for longer storage.

